Mitchell Server




FADE and PADRE Software

Fast Atomic Density Evaluator (FADE)

and

Pairwise Atomic Density Reverse Engineering (PADRE)

The Fast Atomic Density Evaluator (FADE) and Pairwise Atomic Density Reverse Engineering (PADRE) programs calculated packing densities and features of interest on protein surfaces, such as crevices, grooves and protrusions.


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FADE and PADRE are copyrighted but free for non-commercial use.
FADEPADRE.tgz This archive contains the code for running FADE and PADRE.


References

  • Mitchell, J.C., Kerr, R. and Ten Eyck, L.F., Rapid atomic density measures for molecular shape characterization, J. Mol. Graph.Model. 19(3): 325-330, 2001.